No. words: 1567; after pruning: 1541


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 16.1 (1,1:744)  724  0.13 0.00 0.00  UCD005F_B07_BE406908AT02P012F05F111F1_061.ab1        1   742 (38)  C UCD005R_B07_BE406908AT02P012F05F111R1_061.ab1   (42)   745     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  366 nodes

 185 str. conn. components

Path
    1  C UCD005R_B07_BE406908AT02P012F05F111R1_061.ab1   787 
   46    UCD005F_B07_BE406908AT02P012F05F111F1_061.ab1     4 
  282  C UCD005R_B07_BE406908AT02P012F05F111R1_061.ab1   506 
  310    UCD005F_B07_BE406908AT02P012F05F111F1_061.ab1   268 
  430  C UCD005R_B07_BE406908AT02P012F05F111R1_061.ab1   358 
  646    UCD005F_B07_BE406908AT02P012F05F111F1_061.ab1   604 
  650  C UCD005R_B07_BE406908AT02P012F05F111R1_061.ab1   138 
  778    UCD005F_B07_BE406908AT02P012F05F111F1_061.ab1   736 
Contig length: old 822, new 822

Contig length: old 822, new 822
New start: 0