No. words: 1559; after pruning: 1533


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 15.7 (1,1:731)  708  0.00 0.00 0.00  UCD005F_E06_BE406908TU01P012F05F111F1_040.ab1        5   732 (51)  C UCD005R_E06_BE406908TU01P012F05F111R1_040.ab1   (48)   728     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  366 nodes

 185 str. conn. components

Path
    1  C UCD005R_E06_BE406908TU01P012F05F111R1_040.ab1   776 
   52    UCD005F_E06_BE406908TU01P012F05F111F1_040.ab1     8 
   64  C UCD005R_E06_BE406908TU01P012F05F111R1_040.ab1   713 
   72    UCD005F_E06_BE406908TU01P012F05F111F1_040.ab1    28 
  100  C UCD005R_E06_BE406908TU01P012F05F111R1_040.ab1   677 
  104    UCD005F_E06_BE406908TU01P012F05F111F1_040.ab1    60 
  108  C UCD005R_E06_BE406908TU01P012F05F111R1_040.ab1   669 
  112    UCD005F_E06_BE406908TU01P012F05F111F1_040.ab1    68 
  124  C UCD005R_E06_BE406908TU01P012F05F111R1_040.ab1   653 
  132    UCD005F_E06_BE406908TU01P012F05F111F1_040.ab1    88 
  156  C UCD005R_E06_BE406908TU01P012F05F111R1_040.ab1   621 
  160    UCD005F_E06_BE406908TU01P012F05F111F1_040.ab1   116 
  168  C UCD005R_E06_BE406908TU01P012F05F111R1_040.ab1   609 
  200    UCD005F_E06_BE406908TU01P012F05F111F1_040.ab1   156 
  536  C UCD005R_E06_BE406908TU01P012F05F111R1_040.ab1   241 
  640    UCD005F_E06_BE406908TU01P012F05F111F1_040.ab1   596 
  648  C UCD005R_E06_BE406908TU01P012F05F111R1_040.ab1   129 
  660    UCD005F_E06_BE406908TU01P012F05F111F1_040.ab1   616 
  676  C UCD005R_E06_BE406908TU01P012F05F111R1_040.ab1   101 
  772    UCD005F_E06_BE406908TU01P012F05F111F1_040.ab1   728 
Contig length: old 827, new 827

Contig length: old 827, new 827
New start: 0