No. words: 918; after pruning: 892


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    6    0.0 0.8 (1,1:411)  111  3.12 0.00 0.00  UCD005F_F06_BE406908TU02P012F05F111F1_038.ab1        7   134 (0)  C UCD005R_F06_BE406908TU02P012F05F111R1_038.ab1   (378)   406   279 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 6       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  50 nodes

 27 str. conn. components

Path
    1  C UCD005R_F06_BE406908TU02P012F05F111R1_038.ab1   784 
Contig length: old 784, new 784

Contig length: old 784, new 784
New start: 0