No. words: 806; after pruning: 780


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 0.8 (1,1:637)  109  0.00 0.88 0.00  UCD023F_C01_BE426083AT01P028C05P028C111F1_011.ab1        1   114 (0)  C UCD023R_C01_BE426083AT01P028C05P028C111R1_011.ab1   (53)   639   525 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  56 nodes

 30 str. conn. components

Path
    1  C UCD023R_C01_BE426083AT01P028C05P028C111R1_011.ab1   692 
   69    UCD023F_C01_BE426083AT01P028C05P028C111F1_011.ab1    15 
   77  C UCD023R_C01_BE426083AT01P028C05P028C111R1_011.ab1   616 
   81    UCD023F_C01_BE426083AT01P028C05P028C111F1_011.ab1    27 
   85  C UCD023R_C01_BE426083AT01P028C05P028C111R1_011.ab1   608 
Contig length: old 692, new 692

Contig length: old 692, new 692
New start: 0