No. words: 773; after pruning: 747


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 2.2 (1,1:660)  100  0.00 0.00 0.00  UCD023F_D01_BE426083AT02P028C05P028C111F1_009.ab1        1   102 (0)  C UCD023R_D01_BE426083AT02P028C05P028C111R1_009.ab1   (10)   661   560 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  52 nodes

 28 str. conn. components

Path
    1  C UCD023R_D01_BE426083AT02P028C05P028C111R1_009.ab1   671 
   28    UCD023F_D01_BE426083AT02P028C05P028C111F1_009.ab1    18 
   32  C UCD023R_D01_BE426083AT02P028C05P028C111R1_009.ab1   640 
Contig length: old 671, new 671

Contig length: old 671, new 671
New start: 0