No. words: 930; after pruning: 890


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 3.2 (1,1:619)  152  1.27 0.00 0.00  UCD023F_F01_BE426083LD02P028C05P028C111F1_005.ab1        1   158 (0)  C UCD023R_F01_BE426083LD02P028C05P028C111R1_005.ab1   (152)   620   463 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  76 nodes

 40 str. conn. components

Path
    1  C UCD023R_F01_BE426083LD02P028C05P028C111R1_005.ab1   772 
Contig length: old 772, new 772

Contig length: old 772, new 772
New start: 0 
S Change at: 44; seg lengths: entry 1, contig 1