No. words: 1561; after pruning: 1535


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 13.4 (1,1:621)  613  0.00 0.16 0.00  UCD023F_G01_BE426083LD03P028C05P028C111F1_003.ab1        1   619 (138)  C UCD023R_G01_BE426083LD03P028C05P028C111R1_003.ab1   (181)   623     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  306 nodes

 155 str. conn. components

Path
    1  C UCD023R_G01_BE426083LD03P028C05P028C111R1_003.ab1   804 
  343    UCD023F_G01_BE426083LD03P028C05P028C111F1_003.ab1   161 
  411  C UCD023R_G01_BE426083LD03P028C05P028C111R1_003.ab1   394 
  731    UCD023F_G01_BE426083LD03P028C05P028C111F1_003.ab1   549 
  735  C UCD023R_G01_BE426083LD03P028C05P028C111R1_003.ab1    70 
  743    UCD023F_G01_BE426083LD03P028C05P028C111F1_003.ab1   561 
  759  C UCD023R_G01_BE426083LD03P028C05P028C111R1_003.ab1    46 
  775    UCD023F_G01_BE426083LD03P028C05P028C111F1_003.ab1   593 
Contig length: old 939, new 939

Contig length: old 939, new 939
New start: 0