No. words: 1564; after pruning: 1524


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.7 (1,1:615)  614  0.00 0.00 0.00  UCD023F_H01_BE426083LD04P028C05P028C111F1_001.ab1        1   616 (155)  C UCD023R_H01_BE426083LD04P028C05P028C111R1_001.ab1   (177)   616     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  310 nodes

 157 str. conn. components

Path
    1  C UCD023R_H01_BE426083LD04P028C05P028C111R1_001.ab1   793 
  341    UCD023F_H01_BE426083LD04P028C05P028C111F1_001.ab1   164 
  401  C UCD023R_H01_BE426083LD04P028C05P028C111R1_001.ab1   393 
  553    UCD023F_H01_BE426083LD04P028C05P028C111F1_001.ab1   376 
  569  C UCD023R_H01_BE426083LD04P028C05P028C111R1_001.ab1   225 
  585    UCD023F_H01_BE426083LD04P028C05P028C111F1_001.ab1   408 
  593  C UCD023R_H01_BE426083LD04P028C05P028C111R1_001.ab1   201 
  717    UCD023F_H01_BE426083LD04P028C05P028C111F1_001.ab1   540 
  721  C UCD023R_H01_BE426083LD04P028C05P028C111R1_001.ab1    73 
  725    UCD023F_H01_BE426083LD04P028C05P028C111F1_001.ab1   548 
  733  C UCD023R_H01_BE426083LD04P028C05P028C111R1_001.ab1    61 
  737    UCD023F_H01_BE426083LD04P028C05P028C111F1_001.ab1   560 
  753  C UCD023R_H01_BE426083LD04P028C05P028C111R1_001.ab1    41 
  765    UCD023F_H01_BE426083LD04P028C05P028C111F1_001.ab1   588 
Contig length: old 948, new 948

Contig length: old 948, new 948
New start: 0 
S Change at: 124; seg lengths: entry 1, contig 1