No. words: 1078; after pruning: 1052


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.3 (1,1:618)  295  0.97 0.00 0.32  UCD023F_A02_BE426083LD05P028C05P028C111F1_016.ab1        1   309 (0)  C UCD023R_A02_BE426083LD05P028C05P028C111R1_016.ab1   (151)   618   311 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  148 nodes

 76 str. conn. components

Path
    1  C UCD023R_A02_BE426083LD05P028C05P028C111R1_016.ab1   769 
  171    UCD023F_A02_BE426083LD05P028C05P028C111F1_016.ab1    20 
  179  C UCD023R_A02_BE426083LD05P028C05P028C111R1_016.ab1   591 
Contig length: old 769, new 769

Contig length: old 769, new 769
New start: 0