No. words: 1531; after pruning: 1505


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 13.4 (1,1:617)  615  0.00 0.00 0.00  UCD024F_C06_BE426083LD07P028C05P028C111F1_044.ab1        2   618 (92)  C UCD024R_C06_BE426083LD07P028C05P028C111R1_044.ab1   (204)   617     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  310 nodes

 157 str. conn. components

Path
    1  C UCD024R_C06_BE426083LD07P028C05P028C111R1_044.ab1   821 
  228    UCD024F_C06_BE426083LD07P028C05P028C111F1_044.ab1    25 
  232  C UCD024R_C06_BE426083LD07P028C05P028C111R1_044.ab1   590 
  272    UCD024F_C06_BE426083LD07P028C05P028C111F1_044.ab1    69 
  280  C UCD024R_C06_BE426083LD07P028C05P028C111R1_044.ab1   542 
  328    UCD024F_C06_BE426083LD07P028C05P028C111F1_044.ab1   125 
  340  C UCD024R_C06_BE426083LD07P028C05P028C111R1_044.ab1   482 
  352    UCD024F_C06_BE426083LD07P028C05P028C111F1_044.ab1   149 
  432  C UCD024R_C06_BE426083LD07P028C05P028C111R1_044.ab1   390 
  448    UCD024F_C06_BE426083LD07P028C05P028C111F1_044.ab1   245 
  532  C UCD024R_C06_BE426083LD07P028C05P028C111R1_044.ab1   290 
  720    UCD024F_C06_BE426083LD07P028C05P028C111F1_044.ab1   517 
  728  C UCD024R_C06_BE426083LD07P028C05P028C111R1_044.ab1    94 
  748    UCD024F_C06_BE426083LD07P028C05P028C111F1_044.ab1   545 
  756  C UCD024R_C06_BE426083LD07P028C05P028C111R1_044.ab1    66 
  764    UCD024F_C06_BE426083LD07P028C05P028C111F1_044.ab1   561 
  768  C UCD024R_C06_BE426083LD07P028C05P028C111R1_044.ab1    54 
  776    UCD024F_C06_BE426083LD07P028C05P028C111F1_044.ab1   573 
  780  C UCD024R_C06_BE426083LD07P028C05P028C111R1_044.ab1    42 
  792    UCD024F_C06_BE426083LD07P028C05P028C111F1_044.ab1   589 
  808  C UCD024R_C06_BE426083LD07P028C05P028C111R1_044.ab1    14 
  812    UCD024F_C06_BE426083LD07P028C05P028C111F1_044.ab1   609 
Contig length: old 913, new 913

Contig length: old 913, new 913
New start: 0