No. words: 1530; after pruning: 1504


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 13.1 (1,1:619)  615  0.00 0.00 0.00  UCD024F_E06_BE426083LD09P028C05P028C111F1_040.ab1        1   617 (93)  C UCD024R_E06_BE426083LD09P028C05P028C111R1_040.ab1   (200)   620     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  310 nodes

 157 str. conn. components

Path
    1  C UCD024R_E06_BE426083LD09P028C05P028C111R1_040.ab1   820 
  332    UCD024F_E06_BE426083LD09P028C05P028C111F1_040.ab1   132 
  508  C UCD024R_E06_BE426083LD09P028C05P028C111R1_040.ab1   313 
  716    UCD024F_E06_BE426083LD09P028C05P028C111F1_040.ab1   516 
  724  C UCD024R_E06_BE426083LD09P028C05P028C111R1_040.ab1    97 
  744    UCD024F_E06_BE426083LD09P028C05P028C111F1_040.ab1   544 
  752  C UCD024R_E06_BE426083LD09P028C05P028C111R1_040.ab1    69 
  760    UCD024F_E06_BE426083LD09P028C05P028C111F1_040.ab1   560 
  776  C UCD024R_E06_BE426083LD09P028C05P028C111R1_040.ab1    45 
  796    UCD024F_E06_BE426083LD09P028C05P028C111F1_040.ab1   596 
  800  C UCD024R_E06_BE426083LD09P028C05P028C111R1_040.ab1    21 
  812    UCD024F_E06_BE426083LD09P028C05P028C111F1_040.ab1   612 
Contig length: old 910, new 910

Contig length: old 910, new 910
New start: 0