No. words: 1558; after pruning: 1532


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 13.2 (1,1:617)  615  0.00 0.00 0.00  UCD024F_F06_BE426083LD10P028C05P028C111F1_038.ab1        1   617 (120)  C UCD024R_F06_BE426083LD10P028C05P028C111R1_038.ab1   (203)   618     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  310 nodes

 157 str. conn. components

Path
    1  C UCD024R_F06_BE426083LD10P028C05P028C111R1_038.ab1   821 
  275    UCD024F_F06_BE426083LD10P028C05P028C111F1_038.ab1    72 
  283  C UCD024R_F06_BE426083LD10P028C05P028C111R1_038.ab1   539 
  327    UCD024F_F06_BE426083LD10P028C05P028C111F1_038.ab1   124 
  419  C UCD024R_F06_BE426083LD10P028C05P028C111R1_038.ab1   403 
  747    UCD024F_F06_BE426083LD10P028C05P028C111F1_038.ab1   544 
  755  C UCD024R_F06_BE426083LD10P028C05P028C111R1_038.ab1    67 
  763    UCD024F_F06_BE426083LD10P028C05P028C111F1_038.ab1   560 
  767  C UCD024R_F06_BE426083LD10P028C05P028C111R1_038.ab1    55 
  775    UCD024F_F06_BE426083LD10P028C05P028C111F1_038.ab1   572 
  779  C UCD024R_F06_BE426083LD10P028C05P028C111R1_038.ab1    43 
  791    UCD024F_F06_BE426083LD10P028C05P028C111F1_038.ab1   588 
  807  C UCD024R_F06_BE426083LD10P028C05P028C111R1_038.ab1    15 
  811    UCD024F_F06_BE426083LD10P028C05P028C111F1_038.ab1   608 
Contig length: old 940, new 940

Contig length: old 940, new 940
New start: 0