No. words: 1000; after pruning: 974


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.7 (1,1:579)  354  0.28 0.00 0.00  UCD023F_B01_BE426083TU02P028C05P028C111F1_013.ab1        1   357 (0)  C UCD023R_B01_BE426083TU02P028C05P028C111R1_013.ab1   (63)   580   224 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  176 nodes

 90 str. conn. components

Path
    1  C UCD023R_B01_BE426083TU02P028C05P028C111R1_013.ab1   643 
Contig length: old 643, new 643

Contig length: old 643, new 643
New start: 0