No. words: 1014; after pruning: 988


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 5.9 (1,1:347)  313  2.31 0.58 0.00  UCD004F_H10_BE442788LD01P012C04C101F1_066.ab1        1   347 (129)  C UCD004R_H10_BE442788LD01P012C04C101R1_066.ab1   (189)   349     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  156 nodes

 80 str. conn. components

Path
    1  C UCD004R_H10_BE442788LD01P012C04C101R1_066.ab1   538 
  425    UCD004F_H10_BE442788LD01P012C04C101F1_066.ab1   234 
  429  C UCD004R_H10_BE442788LD01P012C04C101R1_066.ab1   110 
  445    UCD004F_H10_BE442788LD01P012C04C101F1_066.ab1   254 
  453  C UCD004R_H10_BE442788LD01P012C04C101R1_066.ab1    86 
  469    UCD004F_H10_BE442788LD01P012C04C101F1_066.ab1   278 
  477  C UCD004R_H10_BE442788LD01P012C04C101R1_066.ab1    62 
  497    UCD004F_H10_BE442788LD01P012C04C101F1_066.ab1   306 
  501  C UCD004R_H10_BE442788LD01P012C04C101R1_066.ab1    38 
  505    UCD004F_H10_BE442788LD01P012C04C101F1_066.ab1   314 
Contig length: old 666, new 667

Contig length: old 667, new 667
New start: 0