No. words: 1017; after pruning: 991


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.3 (1,1:340)  330  0.00 0.00 0.59  UCD004F_D11_BE442788LD05P012C04C101F1_089.ab1        1   341 (128)  C UCD004R_D11_BE442788LD05P012C04C101R1_089.ab1   (209)   339     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  166 nodes

 85 str. conn. components

Path
    1  C UCD004R_D11_BE442788LD05P012C04C101R1_089.ab1   548 
  352    UCD004F_D11_BE442788LD05P012C04C101F1_089.ab1   145 
  356  C UCD004R_D11_BE442788LD05P012C04C101R1_089.ab1   193 
  360    UCD004F_D11_BE442788LD05P012C04C101F1_089.ab1   153 
  364  C UCD004R_D11_BE442788LD05P012C04C101R1_089.ab1   185 
  428    UCD004F_D11_BE442788LD05P012C04C101F1_089.ab1   221 
Contig length: old 676, new 676

Contig length: old 676, new 676
New start: 0