No. words: 1016; after pruning: 990


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.7 (1,1:339)  322  0.30 0.89 0.00  UCD004F_G12_BE442788LD09P012C04C101F1_084.ab1        1   338 (138)  C UCD004R_G12_BE442788LD09P012C04C101R1_084.ab1   (199)   341     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  160 nodes

 82 str. conn. components

Path
    1  C UCD004R_G12_BE442788LD09P012C04C101R1_084.ab1   540 
  380    UCD004F_G12_BE442788LD09P012C04C101F1_084.ab1   180 
  416  C UCD004R_G12_BE442788LD09P012C04C101R1_084.ab1   125 
  428    UCD004F_G12_BE442788LD09P012C04C101F1_084.ab1   228 
Contig length: old 676, new 676

Contig length: old 676, new 676
New start: 0