No. words: 585; after pruning: 559


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)   10   -3.1 -3.1 (1,1:242)  218  0.00 0.43 0.86  UCD030F_F08_BE442788Ta20P012C04P036H061F1_054.ab1       11   242 (50)  C UCD030R_F08_BE442788Ta20P012C04P036H061R1_054.ab1   (60)   233     3 *
  Worst pair: offset 0 
LLR breakdown: discreps: -5.5 (<20 part: -0.1 (#=1), >20:-5.4 (#=2); in HQ: -5.5, out HQ 0.0), match: 5.1  trail: -0.6  lead: -2.2  total: -3.2  218  0.00 0.43 0.86  UCD030F_F08_BE442788Ta20P012C04P036H061F1_054.ab1       11   242 (50)  C UCD030R_F08_BE442788Ta20P012C04P036H061R1_054.ab1   (60)   233     3 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-3.1       1        0

Gap   # merges  # failures
 size
10       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  108 nodes

 56 str. conn. components

Path
    1  C UCD030R_F08_BE442788Ta20P012C04P036H061R1_054.ab1   293 
  156    UCD030F_F08_BE442788Ta20P012C04P036H061F1_054.ab1   105 
  160  C UCD030R_F08_BE442788Ta20P012C04P036H061R1_054.ab1   134 
  172    UCD030F_F08_BE442788Ta20P012C04P036H061F1_054.ab1   121 
  188  C UCD030R_F08_BE442788Ta20P012C04P036H061R1_054.ab1   106 
  196    UCD030F_F08_BE442788Ta20P012C04P036H061F1_054.ab1   145 
  204  C UCD030R_F08_BE442788Ta20P012C04P036H061R1_054.ab1    90 
  212    UCD030F_F08_BE442788Ta20P012C04P036H061F1_054.ab1   161 
  216  C UCD030R_F08_BE442788Ta20P012C04P036H061R1_054.ab1    78 
  220    UCD030F_F08_BE442788Ta20P012C04P036H061F1_054.ab1   169 
  232  C UCD030R_F08_BE442788Ta20P012C04P036H061R1_054.ab1    62 
  236    UCD030F_F08_BE442788Ta20P012C04P036H061F1_054.ab1   185 
Contig length: old 342, new 343

Contig length: old 343, new 343
New start: 0