No. words: 959; after pruning: 933


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.0 (1,1:323)  312  0.00 0.62 0.00  UCD019F_G12_BE443112LD07P028D03D091F1_084.ab1        1   323 (171)  C UCD019R_G12_BE443112LD07P028D03D091R1_084.ab1   (140)   325     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  158 nodes

 81 str. conn. components

Path
    1  C UCD019R_G12_BE443112LD07P028D03D091R1_084.ab1   465 
  257    UCD019F_G12_BE443112LD07P028D03D091F1_084.ab1   115 
Contig length: old 635, new 636

Contig length: old 636, new 636
New start: 0