No. words: 949; after pruning: 923


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 6.5 (1,1:313)  309  0.00 0.00 0.00  UCD016F_B12_BE443112LD08P028D03D091F1_094.ab1        3   314 (170)  C UCD016R_B12_BE443112LD08P028D03D091R1_094.ab1   (153)   312     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  158 nodes

 81 str. conn. components

Path
    1  C UCD016R_B12_BE443112LD08P028D03D091R1_094.ab1   465 
  329    UCD016F_B12_BE443112LD08P028D03D091F1_094.ab1   178 
  345  C UCD016R_B12_BE443112LD08P028D03D091R1_094.ab1   121 
  365    UCD016F_B12_BE443112LD08P028D03D091F1_094.ab1   214 
Contig length: old 635, new 635

Contig length: old 635, new 635
New start: 0