No. words: 644; after pruning: 618


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.1 (1,1:2)  320  0.00 0.00 0.00  UCD013F_F09_BE443948Sn30P001F06P021D031F1_069.ab1        3   323 (0)    UCD013F_H06_BE443948Sn30P001F06P021D031F1_034.ab1        1   321 (0) *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  162 nodes

 83 str. conn. components

Path
    1    UCD013F_F09_BE443948Sn30P001F06P021D031F1_069.ab1     1 
   11    UCD013F_H06_BE443948Sn30P001F06P021D031F1_034.ab1     9 
   15    UCD013F_F09_BE443948Sn30P001F06P021D031F1_069.ab1    15 
   19    UCD013F_H06_BE443948Sn30P001F06P021D031F1_034.ab1    17 
   39    UCD013F_F09_BE443948Sn30P001F06P021D031F1_069.ab1    39 
   47    UCD013F_H06_BE443948Sn30P001F06P021D031F1_034.ab1    45 
   55    UCD013F_F09_BE443948Sn30P001F06P021D031F1_069.ab1    55 
   63    UCD013F_H06_BE443948Sn30P001F06P021D031F1_034.ab1    61 
   67    UCD013F_F09_BE443948Sn30P001F06P021D031F1_069.ab1    67 
   71    UCD013F_H06_BE443948Sn30P001F06P021D031F1_034.ab1    69 
   75    UCD013F_F09_BE443948Sn30P001F06P021D031F1_069.ab1    75 
   87    UCD013F_H06_BE443948Sn30P001F06P021D031F1_034.ab1    85 
   95    UCD013F_F09_BE443948Sn30P001F06P021D031F1_069.ab1    95 
  103    UCD013F_H06_BE443948Sn30P001F06P021D031F1_034.ab1   101 
  139    UCD013F_F09_BE443948Sn30P001F06P021D031F1_069.ab1   139 
  147    UCD013F_H06_BE443948Sn30P001F06P021D031F1_034.ab1   145 
  151    UCD013F_F09_BE443948Sn30P001F06P021D031F1_069.ab1   151 
  159    UCD013F_H06_BE443948Sn30P001F06P021D031F1_034.ab1   157 
  171    UCD013F_F09_BE443948Sn30P001F06P021D031F1_069.ab1   171 
  175    UCD013F_H06_BE443948Sn30P001F06P021D031F1_034.ab1   173 
  203    UCD013F_F09_BE443948Sn30P001F06P021D031F1_069.ab1   203 
  207    UCD013F_H06_BE443948Sn30P001F06P021D031F1_034.ab1   205 
  255    UCD013F_F09_BE443948Sn30P001F06P021D031F1_069.ab1   255 
  259    UCD013F_H06_BE443948Sn30P001F06P021D031F1_034.ab1   257 
  311    UCD013F_F09_BE443948Sn30P001F06P021D031F1_069.ab1   311 
  319    UCD013F_H06_BE443948Sn30P001F06P021D031F1_034.ab1   317 
Contig length: old 323, new 323

Contig length: old 323, new 323
New start: 0