No. words: 1244; after pruning: 1218


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.4 (1,1:572)  559  0.00 0.00 0.17  UCD024F_A07_BE444541AS01P028F03P028F091F1_063.ab1        1   573 (46)  C UCD024R_A07_BE444541AS01P028F03P028F091R1_063.ab1   (53)   572     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  286 nodes

 145 str. conn. components

Path
    1  C UCD024R_A07_BE444541AS01P028F03P028F091R1_063.ab1   625 
   73    UCD024F_A07_BE444541AS01P028F03P028F091F1_063.ab1    20 
   77  C UCD024R_A07_BE444541AS01P028F03P028F091R1_063.ab1   549 
   81    UCD024F_A07_BE444541AS01P028F03P028F091F1_063.ab1    28 
   93  C UCD024R_A07_BE444541AS01P028F03P028F091R1_063.ab1   533 
  101    UCD024F_A07_BE444541AS01P028F03P028F091F1_063.ab1    48 
  113  C UCD024R_A07_BE444541AS01P028F03P028F091R1_063.ab1   513 
  125    UCD024F_A07_BE444541AS01P028F03P028F091F1_063.ab1    72 
  133  C UCD024R_A07_BE444541AS01P028F03P028F091R1_063.ab1   493 
  161    UCD024F_A07_BE444541AS01P028F03P028F091F1_063.ab1   108 
  357  C UCD024R_A07_BE444541AS01P028F03P028F091R1_063.ab1   269 
  389    UCD024F_A07_BE444541AS01P028F03P028F091F1_063.ab1   336 
  405  C UCD024R_A07_BE444541AS01P028F03P028F091R1_063.ab1   221 
  417    UCD024F_A07_BE444541AS01P028F03P028F091F1_063.ab1   364 
  517  C UCD024R_A07_BE444541AS01P028F03P028F091R1_063.ab1   109 
  529    UCD024F_A07_BE444541AS01P028F03P028F091F1_063.ab1   476 
  541  C UCD024R_A07_BE444541AS01P028F03P028F091R1_063.ab1    85 
  553    UCD024F_A07_BE444541AS01P028F03P028F091F1_063.ab1   500 
  589  C UCD024R_A07_BE444541AS01P028F03P028F091R1_063.ab1    37 
  593    UCD024F_A07_BE444541AS01P028F03P028F091F1_063.ab1   540 
Contig length: old 671, new 672

Contig length: old 672, new 672
New start: 0