No. words: 1240; after pruning: 1214


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.4 (1,1:573)  560  0.00 0.00 0.17  UCD024F_B07_BE444541AS02P028F03P028F091F1_061.ab1        1   574 (38)  C UCD024R_B07_BE444541AS02P028F03P028F091R1_061.ab1   (55)   573     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  286 nodes

 145 str. conn. components

Path
    1  C UCD024R_B07_BE444541AS02P028F03P028F091R1_061.ab1   628 
  131    UCD024F_B07_BE444541AS02P028F03P028F091F1_061.ab1    76 
  135  C UCD024R_B07_BE444541AS02P028F03P028F091R1_061.ab1   494 
  151    UCD024F_B07_BE444541AS02P028F03P028F091F1_061.ab1    96 
  183  C UCD024R_B07_BE444541AS02P028F03P028F091R1_061.ab1   446 
  195    UCD024F_B07_BE444541AS02P028F03P028F091F1_061.ab1   140 
  371  C UCD024R_B07_BE444541AS02P028F03P028F091R1_061.ab1   258 
  487    UCD024F_B07_BE444541AS02P028F03P028F091F1_061.ab1   432 
  511  C UCD024R_B07_BE444541AS02P028F03P028F091R1_061.ab1   118 
  531    UCD024F_B07_BE444541AS02P028F03P028F091F1_061.ab1   476 
  547  C UCD024R_B07_BE444541AS02P028F03P028F091R1_061.ab1    82 
  555    UCD024F_B07_BE444541AS02P028F03P028F091F1_061.ab1   500 
  571  C UCD024R_B07_BE444541AS02P028F03P028F091R1_061.ab1    58 
  575    UCD024F_B07_BE444541AS02P028F03P028F091F1_061.ab1   520 
  591  C UCD024R_B07_BE444541AS02P028F03P028F091R1_061.ab1    38 
  595    UCD024F_B07_BE444541AS02P028F03P028F091F1_061.ab1   540 
Contig length: old 666, new 667

Contig length: old 667, new 667
New start: 0