No. words: 1428; after pruning: 1402


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.6 (1,1:576)  560  0.00 0.00 0.35  UCD024F_F07_BE444541LD02P028F03P028F091F1_053.ab1        1   578 (145)  C UCD024R_F07_BE444541LD02P028F03P028F091R1_053.ab1   (129)   576     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  284 nodes

 144 str. conn. components

Path
    1  C UCD024R_F07_BE444541LD02P028F03P028F091R1_053.ab1   705 
  149    UCD024F_F07_BE444541LD02P028F03P028F091F1_053.ab1    20 
  153  C UCD024R_F07_BE444541LD02P028F03P028F091R1_053.ab1   553 
  157    UCD024F_F07_BE444541LD02P028F03P028F091F1_053.ab1    28 
  165  C UCD024R_F07_BE444541LD02P028F03P028F091R1_053.ab1   541 
  189    UCD024F_F07_BE444541LD02P028F03P028F091F1_053.ab1    60 
  205  C UCD024R_F07_BE444541LD02P028F03P028F091R1_053.ab1   501 
  229    UCD024F_F07_BE444541LD02P028F03P028F091F1_053.ab1   100 
  257  C UCD024R_F07_BE444541LD02P028F03P028F091R1_053.ab1   449 
  261    UCD024F_F07_BE444541LD02P028F03P028F091F1_053.ab1   132 
  457  C UCD024R_F07_BE444541LD02P028F03P028F091R1_053.ab1   249 
  557    UCD024F_F07_BE444541LD02P028F03P028F091F1_053.ab1   428 
  577  C UCD024R_F07_BE444541LD02P028F03P028F091R1_053.ab1   129 
  605    UCD024F_F07_BE444541LD02P028F03P028F091F1_053.ab1   476 
  609  C UCD024R_F07_BE444541LD02P028F03P028F091R1_053.ab1    97 
  617    UCD024F_F07_BE444541LD02P028F03P028F091F1_053.ab1   488 
  621  C UCD024R_F07_BE444541LD02P028F03P028F091R1_053.ab1    85 
  633    UCD024F_F07_BE444541LD02P028F03P028F091F1_053.ab1   504 
  645  C UCD024R_F07_BE444541LD02P028F03P028F091R1_053.ab1    61 
  649    UCD024F_F07_BE444541LD02P028F03P028F091F1_053.ab1   520 
  661  C UCD024R_F07_BE444541LD02P028F03P028F091R1_053.ab1    45 
  669    UCD024F_F07_BE444541LD02P028F03P028F091F1_053.ab1   540 
Contig length: old 851, new 852

Contig length: old 852, new 852
New start: 0