No. words: 1046; after pruning: 1020


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)   10    0.0 7.2 (1,1:578)  407  1.81 0.00 0.00  UCD024F_H07_BE444541LD04P028F03P028F091F1_049.ab1       11   451 (0)  C UCD024R_H07_BE444541LD04P028F03P028F091R1_049.ab1   (26)   569   129 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
10       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  198 nodes

 101 str. conn. components

Path
    1    UCD024F_H07_BE444541LD04P028F03P028F091F1_049.ab1     1 
  144  C UCD024R_H07_BE444541LD04P028F03P028F091R1_049.ab1   436 
  148    UCD024F_H07_BE444541LD04P028F03P028F091F1_049.ab1   148 
  196  C UCD024R_H07_BE444541LD04P028F03P028F091R1_049.ab1   384 
  212    UCD024F_H07_BE444541LD04P028F03P028F091F1_049.ab1   212 
  256  C UCD024R_H07_BE444541LD04P028F03P028F091R1_049.ab1   324 
Contig length: old 595, new 579

Contig length: old 579, new 579
New start: 0