No. words: 1425; after pruning: 1385


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.0 (1,1:576)  556  0.17 0.00 0.35  UCD024F_D11_BE444541LD08P028F03P028F091F1_089.ab1        1   578 (185)  C UCD024R_D11_BE444541LD08P028F03P028F091R1_089.ab1   (86)   576     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  280 nodes

 142 str. conn. components

Path
    1  C UCD024R_D11_BE444541LD08P028F03P028F091R1_089.ab1   662 
   94    UCD024F_D11_BE444541LD08P028F03P028F091F1_089.ab1     8 
  144  C UCD024R_D11_BE444541LD08P028F03P028F091R1_089.ab1   519 
  148    UCD024F_D11_BE444541LD08P028F03P028F091F1_089.ab1    62 
  172  C UCD024R_D11_BE444541LD08P028F03P028F091R1_089.ab1   491 
  176    UCD024F_D11_BE444541LD08P028F03P028F091F1_089.ab1    90 
Contig length: old 848, new 849

Contig length: old 849, new 849
New start: 0 
S Change at: 786; seg lengths: entry 1, contig 1