No. words: 1464; after pruning: 1438


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.5 (1,1:579)  563  0.00 0.00 0.34  UCD024F_E11_BE444541LD09P028F03P028F091F1_087.ab1        1   581 (185)  C UCD024R_E11_BE444541LD09P028F03P028F091R1_087.ab1   (119)   579     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  286 nodes

 145 str. conn. components

Path
    1  C UCD024R_E11_BE444541LD09P028F03P028F091R1_087.ab1   698 
  147    UCD024F_E11_BE444541LD09P028F03P028F091F1_087.ab1    28 
  159  C UCD024R_E11_BE444541LD09P028F03P028F091R1_087.ab1   540 
  167    UCD024F_E11_BE444541LD09P028F03P028F091F1_087.ab1    48 
  179  C UCD024R_E11_BE444541LD09P028F03P028F091R1_087.ab1   520 
  191    UCD024F_E11_BE444541LD09P028F03P028F091F1_087.ab1    72 
  199  C UCD024R_E11_BE444541LD09P028F03P028F091R1_087.ab1   500 
  227    UCD024F_E11_BE444541LD09P028F03P028F091F1_087.ab1   108 
  483  C UCD024R_E11_BE444541LD09P028F03P028F091R1_087.ab1   216 
  559    UCD024F_E11_BE444541LD09P028F03P028F091F1_087.ab1   440 
  659  C UCD024R_E11_BE444541LD09P028F03P028F091R1_087.ab1    40 
  663    UCD024F_E11_BE444541LD09P028F03P028F091F1_087.ab1   544 
Contig length: old 884, new 885

Contig length: old 885, new 885
New start: 0