No. words: 1438; after pruning: 1398


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.7 (1,1:618)  603  0.00 0.00 0.16  UCD024F_F11_BE444541LD10P028F03P028F091F1_085.ab1        1   619 (111)  C UCD024R_F11_BE444541LD10P028F03P028F091R1_085.ab1   (90)   618     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  310 nodes

 157 str. conn. components

Path
    1  C UCD024R_F11_BE444541LD10P028F03P028F091R1_085.ab1   708 
  110    UCD024F_F11_BE444541LD10P028F03P028F091F1_085.ab1    20 
  130  C UCD024R_F11_BE444541LD10P028F03P028F091R1_085.ab1   579 
  138    UCD024F_F11_BE444541LD10P028F03P028F091F1_085.ab1    48 
  178  C UCD024R_F11_BE444541LD10P028F03P028F091R1_085.ab1   531 
  186    UCD024F_F11_BE444541LD10P028F03P028F091F1_085.ab1    96 
  622  C UCD024R_F11_BE444541LD10P028F03P028F091R1_085.ab1    87 
  638    UCD024F_F11_BE444541LD10P028F03P028F091F1_085.ab1   548 
Contig length: old 819, new 820

Contig length: old 820, new 820
New start: 0 
S Change at: 87; seg lengths: entry 1, contig 1