No. words: 1422; after pruning: 1382


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.7 (1,1:585)  573  0.00 0.00 0.17  UCD024F_G11_BE444541LD11P028F03P028F091F1_083.ab1        1   586 (183)  C UCD024R_G11_BE444541LD11P028F03P028F091R1_083.ab1   (68)   585     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  290 nodes

 147 str. conn. components

Path
    1  C UCD024R_G11_BE444541LD11P028F03P028F091R1_083.ab1   653 
   87    UCD024F_G11_BE444541LD11P028F03P028F091F1_083.ab1    19 
  131  C UCD024R_G11_BE444541LD11P028F03P028F091R1_083.ab1   523 
  135    UCD024F_G11_BE444541LD11P028F03P028F091F1_083.ab1    67 
  151  C UCD024R_G11_BE444541LD11P028F03P028F091R1_083.ab1   503 
  167    UCD024F_G11_BE444541LD11P028F03P028F091F1_083.ab1    99 
  379  C UCD024R_G11_BE444541LD11P028F03P028F091R1_083.ab1   275 
  507    UCD024F_G11_BE444541LD11P028F03P028F091F1_083.ab1   439 
  611  C UCD024R_G11_BE444541LD11P028F03P028F091R1_083.ab1    43 
  615    UCD024F_G11_BE444541LD11P028F03P028F091F1_083.ab1   547 
  623  C UCD024R_G11_BE444541LD11P028F03P028F091R1_083.ab1    31 
  627    UCD024F_G11_BE444541LD11P028F03P028F091F1_083.ab1   559 
Contig length: old 836, new 837

Contig length: old 837, new 837
New start: 0 
S Change at: 774; seg lengths: entry 1, contig 1