No. words: 1391; after pruning: 1365


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.5 (1,1:580)  556  0.00 0.00 0.68  UCD024F_H11_BE444541LD12P028F03P028F091F1_081.ab1        1   584 (110)  C UCD024R_H11_BE444541LD12P028F03P028F091R1_081.ab1   (117)   580     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  280 nodes

 142 str. conn. components

Path
    1  C UCD024R_H11_BE444541LD12P028F03P028F091R1_081.ab1   697 
  152    UCD024F_H11_BE444541LD12P028F03P028F091F1_081.ab1    35 
  160  C UCD024R_H11_BE444541LD12P028F03P028F091R1_081.ab1   538 
  164    UCD024F_H11_BE444541LD12P028F03P028F091F1_081.ab1    47 
  200  C UCD024R_H11_BE444541LD12P028F03P028F091R1_081.ab1   498 
  220    UCD024F_H11_BE444541LD12P028F03P028F091F1_081.ab1   103 
  252  C UCD024R_H11_BE444541LD12P028F03P028F091R1_081.ab1   446 
  260    UCD024F_H11_BE444541LD12P028F03P028F091F1_081.ab1   143 
  428  C UCD024R_H11_BE444541LD12P028F03P028F091R1_081.ab1   270 
  556    UCD024F_H11_BE444541LD12P028F03P028F091F1_081.ab1   439 
Contig length: old 810, new 811

Contig length: old 811, new 811
New start: 0