No. words: 983; after pruning: 957


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.4 (1,1:421)  421  0.00 0.00 0.00  UCD033F_H04_BE445278AS02P028H06H121F1_018.ab1        1   422 (62)  C UCD033R_H04_BE445278AS02P028H06H121R1_018.ab1   (77)   422     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  212 nodes

 108 str. conn. components

Path
    1  C UCD033R_H04_BE445278AS02P028H06H121R1_018.ab1   499 
  169    UCD033F_H04_BE445278AS02P028H06H121F1_018.ab1    92 
  397  C UCD033R_H04_BE445278AS02P028H06H121R1_018.ab1   103 
  409    UCD033F_H04_BE445278AS02P028H06H121F1_018.ab1   332 
  457  C UCD033R_H04_BE445278AS02P028H06H121R1_018.ab1    43 
  485    UCD033F_H04_BE445278AS02P028H06H121F1_018.ab1   408 
Contig length: old 561, new 561

Contig length: old 561, new 561
New start: 0