No. words: 1002; after pruning: 976


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.9 (1,1:442)  426  0.23 0.23 0.45  UCD033F_A05_BE445278AT01P028H06H121F1_047.ab1        1   444 (36)  C UCD033R_A05_BE445278AT01P028H06H121R1_047.ab1   (79)   443     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  214 nodes

 109 str. conn. components

Path
    1  C UCD033R_A05_BE445278AT01P028H06H121R1_047.ab1   522 
   87    UCD033F_A05_BE445278AT01P028H06H121F1_047.ab1     8 
   95  C UCD033R_A05_BE445278AT01P028H06H121R1_047.ab1   428 
  109    UCD033F_A05_BE445278AT01P028H06H121F1_047.ab1    29 
  133  C UCD033R_A05_BE445278AT01P028H06H121R1_047.ab1   390 
  141    UCD033F_A05_BE445278AT01P028H06H121F1_047.ab1    61 
  153  C UCD033R_A05_BE445278AT01P028H06H121R1_047.ab1   370 
  201    UCD033F_A05_BE445278AT01P028H06H121F1_047.ab1   121 
  401  C UCD033R_A05_BE445278AT01P028H06H121R1_047.ab1   122 
  409    UCD033F_A05_BE445278AT01P028H06H121F1_047.ab1   329 
  461  C UCD033R_A05_BE445278AT01P028H06H121R1_047.ab1    62 
  469    UCD033F_A05_BE445278AT01P028H06H121F1_047.ab1   389 
Contig length: old 559, new 560

Contig length: old 560, new 560
New start: 0