No. words: 1442; after pruning: 1416


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.0 (1,1:1163)  267  0.36 0.00 0.00  UCD006R_H09_BE445431LD02P012C05P012C111F1_065.ab1      497   774 (0)  C UCD006F_H09_BE445431LD02P012C05P012C111F1_065.ab1   (0)   668   391 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  134 nodes

 69 str. conn. components

Path
    1    UCD006R_H09_BE445431LD02P012C05P012C111F1_065.ab1     1 
  581  C UCD006F_H09_BE445431LD02P012C05P012C111F1_065.ab1   584 
  589    UCD006R_H09_BE445431LD02P012C05P012C111F1_065.ab1   589 
  593  C UCD006F_H09_BE445431LD02P012C05P012C111F1_065.ab1   572 
Contig length: old 1164, new 1164

Contig length: old 1164, new 1164
New start: 0