No. words: 1231; after pruning: 1205


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 1.2 (1,1:1172)   55  0.00 0.00 0.00  UCD006R_B10_BE445431LD04P012C05P012C111F1_078.ab1      589   646 (0)  C UCD006F_B10_BE445431LD04P012C05P012C111F1_078.ab1   (0)   585   528 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  30 nodes

 17 str. conn. components

Path
    1    UCD006R_B10_BE445431LD04P012C05P012C111F1_078.ab1     1 
  596  C UCD006F_B10_BE445431LD04P012C05P012C111F1_078.ab1   578 
  604    UCD006R_B10_BE445431LD04P012C05P012C111F1_078.ab1   604 
  612  C UCD006F_B10_BE445431LD04P012C05P012C111F1_078.ab1   562 
  628    UCD006R_B10_BE445431LD04P012C05P012C111F1_078.ab1   628 
  632  C UCD006F_B10_BE445431LD04P012C05P012C111F1_078.ab1   542 
Contig length: old 1173, new 1173

Contig length: old 1173, new 1173
New start: 0