No. words: 1421; after pruning: 1395


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 4.9 (1,1:1186)  226  0.43 0.00 0.00  UCD006R_C10_BE445431LD05P012C05P012C111F1_076.ab1      506   739 (0)  C UCD006F_C10_BE445431LD05P012C05P012C111F1_076.ab1   (0)   682   449 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  114 nodes

 59 str. conn. components

Path
    1    UCD006R_C10_BE445431LD05P012C05P012C111F1_076.ab1     1 
  565  C UCD006F_C10_BE445431LD05P012C05P012C111F1_076.ab1   623 
  569    UCD006R_C10_BE445431LD05P012C05P012C111F1_076.ab1   569 
  589  C UCD006F_C10_BE445431LD05P012C05P012C111F1_076.ab1   599 
  593    UCD006R_C10_BE445431LD05P012C05P012C111F1_076.ab1   593 
  609  C UCD006F_C10_BE445431LD05P012C05P012C111F1_076.ab1   579 
Contig length: old 1187, new 1187

Contig length: old 1187, new 1187
New start: 0