No. words: 1459; after pruning: 1433


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.1 (1,1:1182)  268  0.00 0.00 0.00  UCD006R_D10_BE445431LD06P012C05P012C111F1_074.ab1      480   755 (0)  C UCD006F_D10_BE445431LD06P012C05P012C111F1_074.ab1   (0)   704   429 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  140 nodes

 72 str. conn. components

Path
    1    UCD006R_D10_BE445431LD06P012C05P012C111F1_074.ab1     1 
  547  C UCD006F_D10_BE445431LD06P012C05P012C111F1_074.ab1   637 
  555    UCD006R_D10_BE445431LD06P012C05P012C111F1_074.ab1   555 
  571  C UCD006F_D10_BE445431LD06P012C05P012C111F1_074.ab1   613 
  575    UCD006R_D10_BE445431LD06P012C05P012C111F1_074.ab1   575 
  583  C UCD006F_D10_BE445431LD06P012C05P012C111F1_074.ab1   601 
  587    UCD006R_D10_BE445431LD06P012C05P012C111F1_074.ab1   587 
  607  C UCD006F_D10_BE445431LD06P012C05P012C111F1_074.ab1   577 
Contig length: old 1183, new 1183

Contig length: old 1183, new 1183
New start: 0