No. words: 1538; after pruning: 1512


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.0 (1,1:1163)  357  0.53 0.00 0.00  UCD006R_E10_BE445431LD07P012C05P012C111F1_072.ab1      472   845 (0)  C UCD006F_E10_BE445431LD07P012C05P012C111F1_072.ab1   (0)   693   320 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  184 nodes

 94 str. conn. components

Path
    1    UCD006R_E10_BE445431LD07P012C05P012C111F1_072.ab1     1 
  555  C UCD006F_E10_BE445431LD07P012C05P012C111F1_072.ab1   610 
  559    UCD006R_E10_BE445431LD07P012C05P012C111F1_072.ab1   559 
  575  C UCD006F_E10_BE445431LD07P012C05P012C111F1_072.ab1   590 
  579    UCD006R_E10_BE445431LD07P012C05P012C111F1_072.ab1   579 
  595  C UCD006F_E10_BE445431LD07P012C05P012C111F1_072.ab1   570 
  607    UCD006R_E10_BE445431LD07P012C05P012C111F1_072.ab1   607 
  611  C UCD006F_E10_BE445431LD07P012C05P012C111F1_072.ab1   554 
Contig length: old 1164, new 1164

Contig length: old 1164, new 1164
New start: 0