No. words: 1286; after pruning: 1260


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 11.5 (1,1:598)  579  0.17 0.00 0.17  UCD015F_B06_BE445431Sn24P012C05P025B091F1_046.ab1        1   596 (42)  C UCD015R_B06_BE445431Sn24P012C05P025B091R1_046.ab1   (50)   598     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  292 nodes

 148 str. conn. components

Path
    1  C UCD015R_B06_BE445431Sn24P012C05P025B091R1_046.ab1   648 
  154    UCD015F_B06_BE445431Sn24P012C05P025B091F1_046.ab1   104 
  186  C UCD015R_B06_BE445431Sn24P012C05P025B091R1_046.ab1   463 
  230    UCD015F_B06_BE445431Sn24P012C05P025B091F1_046.ab1   180 
  286  C UCD015R_B06_BE445431Sn24P012C05P025B091R1_046.ab1   363 
  394    UCD015F_B06_BE445431Sn24P012C05P025B091F1_046.ab1   344 
  422  C UCD015R_B06_BE445431Sn24P012C05P025B091R1_046.ab1   227 
  490    UCD015F_B06_BE445431Sn24P012C05P025B091F1_046.ab1   440 
  506  C UCD015R_B06_BE445431Sn24P012C05P025B091R1_046.ab1   143 
  538    UCD015F_B06_BE445431Sn24P012C05P025B091F1_046.ab1   488 
  546  C UCD015R_B06_BE445431Sn24P012C05P025B091R1_046.ab1   103 
  550    UCD015F_B06_BE445431Sn24P012C05P025B091F1_046.ab1   500 
  566  C UCD015R_B06_BE445431Sn24P012C05P025B091R1_046.ab1    83 
  574    UCD015F_B06_BE445431Sn24P012C05P025B091F1_046.ab1   524 
Contig length: old 687, new 688

Contig length: old 688, new 688
New start: 0