No. words: 1158; after pruning: 1132


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 3.8 (1,1:6)  266  1.06 0.35 0.00  UCD012R_B09_BE445431Sn24P025F08P012C111R1_077.ab1        8   289 (0)    UCD022_D12_BE445431Sn24P025F08P012C111R2_090.ab1        1   283 (586) *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  132 nodes

 68 str. conn. components

Path
    1    UCD012R_B09_BE445431Sn24P025F08P012C111R1_077.ab1     1 
   19    UCD022_D12_BE445431Sn24P025F08P012C111R2_090.ab1    12 
   34    UCD012R_B09_BE445431Sn24P025F08P012C111R1_077.ab1    33 
   38    UCD022_D12_BE445431Sn24P025F08P012C111R2_090.ab1    31 
  101    UCD012R_B09_BE445431Sn24P025F08P012C111R1_077.ab1   100 
  109    UCD022_D12_BE445431Sn24P025F08P012C111R2_090.ab1   102 
Contig length: old 875, new 876

Contig length: old 876, new 876
New start: 0