No. words: 1290; after pruning: 1264


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    5    0.0 9.3 (1,1:599)  577  0.00 0.17 0.17  UCD015F_C06_BE445431Sn25P012C05P025B091F1_044.ab1        6   600 (47)  C UCD015R_C06_BE445431Sn25P012C05P025B091R1_044.ab1   (48)   595     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 5       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  294 nodes

 149 str. conn. components

Path
    1  C UCD015R_C06_BE445431Sn25P012C05P025B091R1_044.ab1   643 
   89    UCD015F_C06_BE445431Sn25P012C05P025B091F1_044.ab1    45 
   93  C UCD015R_C06_BE445431Sn25P012C05P025B091R1_044.ab1   551 
  153    UCD015F_C06_BE445431Sn25P012C05P025B091F1_044.ab1   109 
  161  C UCD015R_C06_BE445431Sn25P012C05P025B091R1_044.ab1   483 
  165    UCD015F_C06_BE445431Sn25P012C05P025B091F1_044.ab1   121 
  181  C UCD015R_C06_BE445431Sn25P012C05P025B091R1_044.ab1   463 
  213    UCD015F_C06_BE445431Sn25P012C05P025B091F1_044.ab1   169 
  265  C UCD015R_C06_BE445431Sn25P012C05P025B091R1_044.ab1   379 
  273    UCD015F_C06_BE445431Sn25P012C05P025B091F1_044.ab1   229 
  285  C UCD015R_C06_BE445431Sn25P012C05P025B091R1_044.ab1   359 
  301    UCD015F_C06_BE445431Sn25P012C05P025B091F1_044.ab1   257 
  333  C UCD015R_C06_BE445431Sn25P012C05P025B091R1_044.ab1   311 
  341    UCD015F_C06_BE445431Sn25P012C05P025B091F1_044.ab1   297 
  349  C UCD015R_C06_BE445431Sn25P012C05P025B091R1_044.ab1   295 
  365    UCD015F_C06_BE445431Sn25P012C05P025B091F1_044.ab1   321 
  433  C UCD015R_C06_BE445431Sn25P012C05P025B091R1_044.ab1   211 
  493    UCD015F_C06_BE445431Sn25P012C05P025B091F1_044.ab1   449 
  501  C UCD015R_C06_BE445431Sn25P012C05P025B091R1_044.ab1   143 
  509    UCD015F_C06_BE445431Sn25P012C05P025B091F1_044.ab1   465 
  513  C UCD015R_C06_BE445431Sn25P012C05P025B091R1_044.ab1   131 
  537    UCD015F_C06_BE445431Sn25P012C05P025B091F1_044.ab1   493 
  545  C UCD015R_C06_BE445431Sn25P012C05P025B091R1_044.ab1    99 
  553    UCD015F_C06_BE445431Sn25P012C05P025B091F1_044.ab1   509 
  593  C UCD015R_C06_BE445431Sn25P012C05P025B091R1_044.ab1    51 
  605    UCD015F_C06_BE445431Sn25P012C05P025B091F1_044.ab1   561 
Contig length: old 690, new 691

Contig length: old 691, new 691
New start: 0