No. words: 1291; after pruning: 1265


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 11.4 (1,1:598)  582  0.00 0.00 0.17  UCD015F_D06_BE445431Sn30P012C05P025B091F1_042.ab1        1   596 (47)  C UCD015R_D06_BE445431Sn30P012C05P025B091R1_042.ab1   (50)   598     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  296 nodes

 150 str. conn. components

Path
    1  C UCD015R_D06_BE445431Sn30P012C05P025B091R1_042.ab1   648 
  154    UCD015F_D06_BE445431Sn30P012C05P025B091F1_042.ab1   104 
  182  C UCD015R_D06_BE445431Sn30P012C05P025B091R1_042.ab1   467 
  210    UCD015F_D06_BE445431Sn30P012C05P025B091F1_042.ab1   160 
  278  C UCD015R_D06_BE445431Sn30P012C05P025B091R1_042.ab1   371 
  302    UCD015F_D06_BE445431Sn30P012C05P025B091F1_042.ab1   252 
  334  C UCD015R_D06_BE445431Sn30P012C05P025B091R1_042.ab1   315 
  342    UCD015F_D06_BE445431Sn30P012C05P025B091F1_042.ab1   292 
  350  C UCD015R_D06_BE445431Sn30P012C05P025B091R1_042.ab1   299 
  386    UCD015F_D06_BE445431Sn30P012C05P025B091F1_042.ab1   336 
  390  C UCD015R_D06_BE445431Sn30P012C05P025B091R1_042.ab1   259 
  394    UCD015F_D06_BE445431Sn30P012C05P025B091F1_042.ab1   344 
  434  C UCD015R_D06_BE445431Sn30P012C05P025B091R1_042.ab1   215 
  446    UCD015F_D06_BE445431Sn30P012C05P025B091F1_042.ab1   396 
  454  C UCD015R_D06_BE445431Sn30P012C05P025B091R1_042.ab1   195 
  494    UCD015F_D06_BE445431Sn30P012C05P025B091F1_042.ab1   444 
  510  C UCD015R_D06_BE445431Sn30P012C05P025B091R1_042.ab1   139 
  522    UCD015F_D06_BE445431Sn30P012C05P025B091F1_042.ab1   472 
  526  C UCD015R_D06_BE445431Sn30P012C05P025B091R1_042.ab1   123 
  538    UCD015F_D06_BE445431Sn30P012C05P025B091F1_042.ab1   488 
  550  C UCD015R_D06_BE445431Sn30P012C05P025B091R1_042.ab1    99 
  578    UCD015F_D06_BE445431Sn30P012C05P025B091F1_042.ab1   528 
  582  C UCD015R_D06_BE445431Sn30P012C05P025B091R1_042.ab1    67 
  586    UCD015F_D06_BE445431Sn30P012C05P025B091F1_042.ab1   536 
  590  C UCD015R_D06_BE445431Sn30P012C05P025B091R1_042.ab1    59 
  606    UCD015F_D06_BE445431Sn30P012C05P025B091F1_042.ab1   556 
  626  C UCD015R_D06_BE445431Sn30P012C05P025B091R1_042.ab1    23 
  634    UCD015F_D06_BE445431Sn30P012C05P025B091F1_042.ab1   584 
Contig length: old 692, new 693

Contig length: old 693, new 693
New start: 0