No. words: 1273; after pruning: 1247


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.6 (1,1:577)  560  0.00 0.17 0.17  UCD015F_E04_BE445431Ta11P012C05P025B091F1_024.ab1        1   578 (65)  C UCD015R_E04_BE445431Ta11P012C05P025B091R1_024.ab1   (52)   578     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  284 nodes

 144 str. conn. components

Path
    1  C UCD015R_E04_BE445431Ta11P012C05P025B091R1_024.ab1   630 
   93    UCD015F_E04_BE445431Ta11P012C05P025B091F1_024.ab1    40 
   97  C UCD015R_E04_BE445431Ta11P012C05P025B091R1_024.ab1   534 
  141    UCD015F_E04_BE445431Ta11P012C05P025B091F1_024.ab1    88 
  149  C UCD015R_E04_BE445431Ta11P012C05P025B091R1_024.ab1   482 
  153    UCD015F_E04_BE445431Ta11P012C05P025B091F1_024.ab1   100 
  157  C UCD015R_E04_BE445431Ta11P012C05P025B091R1_024.ab1   474 
  165    UCD015F_E04_BE445431Ta11P012C05P025B091F1_024.ab1   112 
  181  C UCD015R_E04_BE445431Ta11P012C05P025B091R1_024.ab1   450 
  229    UCD015F_E04_BE445431Ta11P012C05P025B091F1_024.ab1   176 
  285  C UCD015R_E04_BE445431Ta11P012C05P025B091R1_024.ab1   346 
  301    UCD015F_E04_BE445431Ta11P012C05P025B091F1_024.ab1   248 
  433  C UCD015R_E04_BE445431Ta11P012C05P025B091R1_024.ab1   198 
  489    UCD015F_E04_BE445431Ta11P012C05P025B091F1_024.ab1   436 
  525  C UCD015R_E04_BE445431Ta11P012C05P025B091R1_024.ab1   106 
  537    UCD015F_E04_BE445431Ta11P012C05P025B091F1_024.ab1   484 
  565  C UCD015R_E04_BE445431Ta11P012C05P025B091R1_024.ab1    66 
  601    UCD015F_E04_BE445431Ta11P012C05P025B091F1_024.ab1   548 
Contig length: old 695, new 696

Contig length: old 696, new 696
New start: 0