No. words: 1249; after pruning: 1223


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.6 (1,1:553)  534  0.00 0.18 0.18  UCD015F_F04_BE445431Ta12P012C05P025B091F1_022.ab1        1   554 (55)  C UCD015R_F04_BE445431Ta12P012C05P025B091R1_022.ab1   (86)   554     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  274 nodes

 139 str. conn. components

Path
    1  C UCD015R_F04_BE445431Ta12P012C05P025B091R1_022.ab1   640 
  302    UCD015F_F04_BE445431Ta12P012C05P025B091F1_022.ab1   216 
  334  C UCD015R_F04_BE445431Ta12P012C05P025B091R1_022.ab1   307 
  346    UCD015F_F04_BE445431Ta12P012C05P025B091F1_022.ab1   260 
  354  C UCD015R_F04_BE445431Ta12P012C05P025B091R1_022.ab1   287 
  366    UCD015F_F04_BE445431Ta12P012C05P025B091F1_022.ab1   280 
  394  C UCD015R_F04_BE445431Ta12P012C05P025B091R1_022.ab1   247 
  398    UCD015F_F04_BE445431Ta12P012C05P025B091F1_022.ab1   312 
  434  C UCD015R_F04_BE445431Ta12P012C05P025B091R1_022.ab1   207 
  438    UCD015F_F04_BE445431Ta12P012C05P025B091F1_022.ab1   352 
Contig length: old 695, new 695

Contig length: old 695, new 695
New start: 0