No. words: 1154; after pruning: 1128


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.5 (1,1:517)  510  0.00 0.00 0.00  UCD015F_G04_BE445431Ta13P012C05P025B091F1_020.ab1        1   518 (35)  C UCD015R_G04_BE445431Ta13P012C05P025B091R1_020.ab1   (83)   518     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  260 nodes

 132 str. conn. components

Path
    1  C UCD015R_G04_BE445431Ta13P012C05P025B091R1_020.ab1   601 
   87    UCD015F_G04_BE445431Ta13P012C05P025B091F1_020.ab1     4 
   91  C UCD015R_G04_BE445431Ta13P012C05P025B091R1_020.ab1   511 
   99    UCD015F_G04_BE445431Ta13P012C05P025B091F1_020.ab1    16 
  119  C UCD015R_G04_BE445431Ta13P012C05P025B091R1_020.ab1   483 
  123    UCD015F_G04_BE445431Ta13P012C05P025B091F1_020.ab1    40 
  191  C UCD015R_G04_BE445431Ta13P012C05P025B091R1_020.ab1   411 
  199    UCD015F_G04_BE445431Ta13P012C05P025B091F1_020.ab1   116 
  227  C UCD015R_G04_BE445431Ta13P012C05P025B091R1_020.ab1   375 
  231    UCD015F_G04_BE445431Ta13P012C05P025B091F1_020.ab1   148 
  447  C UCD015R_G04_BE445431Ta13P012C05P025B091R1_020.ab1   155 
  451    UCD015F_G04_BE445431Ta13P012C05P025B091F1_020.ab1   368 
  459  C UCD015R_G04_BE445431Ta13P012C05P025B091R1_020.ab1   143 
  463    UCD015F_G04_BE445431Ta13P012C05P025B091F1_020.ab1   380 
  475  C UCD015R_G04_BE445431Ta13P012C05P025B091R1_020.ab1   127 
  483    UCD015F_G04_BE445431Ta13P012C05P025B091F1_020.ab1   400 
  539  C UCD015R_G04_BE445431Ta13P012C05P025B091R1_020.ab1    63 
  555    UCD015F_G04_BE445431Ta13P012C05P025B091F1_020.ab1   472 
  563  C UCD015R_G04_BE445431Ta13P012C05P025B091R1_020.ab1    39 
  567    UCD015F_G04_BE445431Ta13P012C05P025B091F1_020.ab1   484 
  571  C UCD015R_G04_BE445431Ta13P012C05P025B091R1_020.ab1    31 
  575    UCD015F_G04_BE445431Ta13P012C05P025B091F1_020.ab1   492 
  583  C UCD015R_G04_BE445431Ta13P012C05P025B091R1_020.ab1    19 
  587    UCD015F_G04_BE445431Ta13P012C05P025B091F1_020.ab1   504 
Contig length: old 636, new 636

Contig length: old 636, new 636
New start: 0