No. words: 1595; after pruning: 1556


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      3

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 11.4 (1,1:882)  546  0.18 0.00 0.18  UCD022_A11_BE445431Ta13P025F08P012C111R2_095.ab1      310   875 (3)  C UCD022_H01_BE445431Ta13P025F08P012C111F2_001.ab1   (0)   574    10 *

Pass: 3
#reads  #contigs (not counting singlets)
    1      1
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    
Merge:(0)    5    0.0 1.9 (2,1:-7)  127  0.76 0.00 0.00  UCD022_A11_BE445431Ta13P025F08P012C111R2_095.ab1        6   136 (742)    UCD012R_G07_BE445431Ta13P025F08P012C111R1_051.ab1       13   143 (0) *

Pass: 4
#reads  #contigs (not counting singlets)
    3      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 5       1        0

Offset
  0       1 

Read equivalence class histogram:
    3    1

Chimera merges: 


Contig 1:  338 nodes

 172 str. conn. components

Path
    1    UCD012R_G07_BE445431Ta13P025F08P012C111R1_051.ab1     1 
   36    UCD022_A11_BE445431Ta13P025F08P012C111R2_095.ab1    29 
  586  C UCD022_H01_BE445431Ta13P025F08P012C111F2_001.ab1   305 
  590    UCD022_A11_BE445431Ta13P025F08P012C111R2_095.ab1   583 
  610  C UCD022_H01_BE445431Ta13P025F08P012C111F2_001.ab1   281 
  622    UCD022_A11_BE445431Ta13P025F08P012C111R2_095.ab1   615 
  626  C UCD022_H01_BE445431Ta13P025F08P012C111F2_001.ab1   265 
Contig length: old 890, new 890

Contig length: old 890, new 891
New start: 0 
I Change at: 855; seg lengths: entry 1, contig 0