No. words: 1274; after pruning: 1248


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 11.2 (1,1:575)  558  0.00 0.00 0.17  UCD015F_H04_BE445431Ta14P012C05P025B091F1_018.ab1        1   573 (51)  C UCD015R_H04_BE445431Ta14P012C05P025B091R1_018.ab1   (75)   575     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  284 nodes

 144 str. conn. components

Path
    1  C UCD015R_H04_BE445431Ta14P012C05P025B091R1_018.ab1   650 
  235    UCD015F_H04_BE445431Ta14P012C05P025B091F1_018.ab1   160 
  239  C UCD015R_H04_BE445431Ta14P012C05P025B091R1_018.ab1   412 
  291    UCD015F_H04_BE445431Ta14P012C05P025B091F1_018.ab1   216 
  303  C UCD015R_H04_BE445431Ta14P012C05P025B091R1_018.ab1   348 
  323    UCD015F_H04_BE445431Ta14P012C05P025B091F1_018.ab1   248 
  339  C UCD015R_H04_BE445431Ta14P012C05P025B091R1_018.ab1   312 
  343    UCD015F_H04_BE445431Ta14P012C05P025B091F1_018.ab1   268 
  355  C UCD015R_H04_BE445431Ta14P012C05P025B091R1_018.ab1   296 
  371    UCD015F_H04_BE445431Ta14P012C05P025B091F1_018.ab1   296 
  391  C UCD015R_H04_BE445431Ta14P012C05P025B091R1_018.ab1   260 
  399    UCD015F_H04_BE445431Ta14P012C05P025B091F1_018.ab1   324 
  435  C UCD015R_H04_BE445431Ta14P012C05P025B091R1_018.ab1   216 
  439    UCD015F_H04_BE445431Ta14P012C05P025B091F1_018.ab1   364 
Contig length: old 698, new 699

Contig length: old 699, new 699
New start: 0