No. words: 1266; after pruning: 1240


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 12.3 (1,1:571)  561  0.00 0.00 0.00  UCD015F_A05_BE445431Ta15P012C05P025B091F1_047.ab1        1   571 (50)  C UCD015R_A05_BE445431Ta15P012C05P025B091R1_047.ab1   (73)   572     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  288 nodes

 146 str. conn. components

Path
    1  C UCD015R_A05_BE445431Ta15P012C05P025B091R1_047.ab1   645 
  153    UCD015F_A05_BE445431Ta15P012C05P025B091F1_047.ab1    80 
  165  C UCD015R_A05_BE445431Ta15P012C05P025B091R1_047.ab1   481 
  169    UCD015F_A05_BE445431Ta15P012C05P025B091F1_047.ab1    96 
  185  C UCD015R_A05_BE445431Ta15P012C05P025B091R1_047.ab1   461 
  217    UCD015F_A05_BE445431Ta15P012C05P025B091F1_047.ab1   144 
  289  C UCD015R_A05_BE445431Ta15P012C05P025B091R1_047.ab1   357 
  309    UCD015F_A05_BE445431Ta15P012C05P025B091F1_047.ab1   236 
  337  C UCD015R_A05_BE445431Ta15P012C05P025B091R1_047.ab1   309 
  345    UCD015F_A05_BE445431Ta15P012C05P025B091F1_047.ab1   272 
  353  C UCD015R_A05_BE445431Ta15P012C05P025B091R1_047.ab1   293 
  361    UCD015F_A05_BE445431Ta15P012C05P025B091F1_047.ab1   288 
  393  C UCD015R_A05_BE445431Ta15P012C05P025B091R1_047.ab1   253 
  401    UCD015F_A05_BE445431Ta15P012C05P025B091F1_047.ab1   328 
  429  C UCD015R_A05_BE445431Ta15P012C05P025B091R1_047.ab1   217 
  449    UCD015F_A05_BE445431Ta15P012C05P025B091F1_047.ab1   376 
  453  C UCD015R_A05_BE445431Ta15P012C05P025B091R1_047.ab1   193 
  477    UCD015F_A05_BE445431Ta15P012C05P025B091F1_047.ab1   404 
Contig length: old 694, new 694

Contig length: old 694, new 694
New start: 0