No. words: 820; after pruning: 794


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 4.4 (1,1:-15)  263  0.00 0.37 0.00  UCD012R_A08_BE445431Ta15P025F08P012C111R1_064.ab1        1   270 (0)    UCD022_C11_BE445431Ta15P025F08P012C111R2_091.ab1       15   285 (265) *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  134 nodes

 69 str. conn. components

Path
    1    UCD022_C11_BE445431Ta15P025F08P012C111R2_091.ab1     1 
   26    UCD012R_A08_BE445431Ta15P025F08P012C111R1_064.ab1    11 
   42    UCD022_C11_BE445431Ta15P025F08P012C111R2_091.ab1    42 
   78    UCD012R_A08_BE445431Ta15P025F08P012C111R1_064.ab1    63 
   86    UCD022_C11_BE445431Ta15P025F08P012C111R2_091.ab1    86 
   94    UCD012R_A08_BE445431Ta15P025F08P012C111R1_064.ab1    79 
  126    UCD022_C11_BE445431Ta15P025F08P012C111R2_091.ab1   126 
  158    UCD012R_A08_BE445431Ta15P025F08P012C111R1_064.ab1   143 
  162    UCD022_C11_BE445431Ta15P025F08P012C111R2_091.ab1   162 
Contig length: old 550, new 550

Contig length: old 550, new 550
New start: 0