No. words: 1285; after pruning: 1259


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 10.0 (1,1:608)  588  0.00 0.17 0.17  UCD015F_B05_BE445431Ta16P012C05P025B091F1_045.ab1        1   606 (28)  C UCD015R_B05_BE445431Ta16P012C05P025B091R1_045.ab1   (42)   609     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  296 nodes

 150 str. conn. components

Path
    1  C UCD015R_B05_BE445431Ta16P012C05P025B091R1_045.ab1   651 
   91    UCD015F_B05_BE445431Ta16P012C05P025B091F1_045.ab1    48 
  107  C UCD015R_B05_BE445431Ta16P012C05P025B091R1_045.ab1   545 
  115    UCD015F_B05_BE445431Ta16P012C05P025B091F1_045.ab1    72 
  151  C UCD015R_B05_BE445431Ta16P012C05P025B091R1_045.ab1   501 
  155    UCD015F_B05_BE445431Ta16P012C05P025B091F1_045.ab1   112 
  159  C UCD015R_B05_BE445431Ta16P012C05P025B091R1_045.ab1   493 
  167    UCD015F_B05_BE445431Ta16P012C05P025B091F1_045.ab1   124 
  183  C UCD015R_B05_BE445431Ta16P012C05P025B091R1_045.ab1   469 
  203    UCD015F_B05_BE445431Ta16P012C05P025B091F1_045.ab1   160 
  435  C UCD015R_B05_BE445431Ta16P012C05P025B091R1_045.ab1   217 
  443    UCD015F_B05_BE445431Ta16P012C05P025B091F1_045.ab1   400 
  451  C UCD015R_B05_BE445431Ta16P012C05P025B091R1_045.ab1   201 
  491    UCD015F_B05_BE445431Ta16P012C05P025B091F1_045.ab1   448 
  511  C UCD015R_B05_BE445431Ta16P012C05P025B091R1_045.ab1   141 
  519    UCD015F_B05_BE445431Ta16P012C05P025B091F1_045.ab1   476 
  523  C UCD015R_B05_BE445431Ta16P012C05P025B091R1_045.ab1   129 
  539    UCD015F_B05_BE445431Ta16P012C05P025B091F1_045.ab1   496 
  555  C UCD015R_B05_BE445431Ta16P012C05P025B091R1_045.ab1    97 
  623    UCD015F_B05_BE445431Ta16P012C05P025B091F1_045.ab1   580 
  627  C UCD015R_B05_BE445431Ta16P012C05P025B091R1_045.ab1    25 
  635    UCD015F_B05_BE445431Ta16P012C05P025B091F1_045.ab1   592 
Contig length: old 676, new 677

Contig length: old 677, new 677
New start: 0