No. words: 1176; after pruning: 1150


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.5 (1,1:0)  327  0.88 0.00 0.00  UCD012R_B08_BE445431Ta16P025F08P012C111R1_062.ab1        1   341 (0)    UCD022_D11_BE445431Ta16P025F08P012C111R2_089.ab1        1   341 (494) *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  162 nodes

 83 str. conn. components

Path
    1    UCD012R_B08_BE445431Ta16P025F08P012C111R1_062.ab1     1 
   12    UCD022_D11_BE445431Ta16P025F08P012C111R2_089.ab1    12 
   20    UCD012R_B08_BE445431Ta16P025F08P012C111R1_062.ab1    20 
   24    UCD022_D11_BE445431Ta16P025F08P012C111R2_089.ab1    24 
   36    UCD012R_B08_BE445431Ta16P025F08P012C111R1_062.ab1    36 
   40    UCD022_D11_BE445431Ta16P025F08P012C111R2_089.ab1    40 
   76    UCD012R_B08_BE445431Ta16P025F08P012C111R1_062.ab1    76 
   84    UCD022_D11_BE445431Ta16P025F08P012C111R2_089.ab1    84 
  132    UCD012R_B08_BE445431Ta16P025F08P012C111R1_062.ab1   132 
  136    UCD022_D11_BE445431Ta16P025F08P012C111R2_089.ab1   136 
Contig length: old 835, new 835

Contig length: old 835, new 835
New start: 0