No. words: 1281; after pruning: 1255


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.8 (1,1:593)  576  0.00 0.00 0.34  UCD015F_E05_BE445431Ta19P012C05P025B091F1_039.ab1        1   595 (42)  C UCD015R_E05_BE445431Ta19P012C05P025B091R1_039.ab1   (51)   593     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  294 nodes

 149 str. conn. components

Path
    1  C UCD015R_E05_BE445431Ta19P012C05P025B091R1_039.ab1   644 
   95    UCD015F_E05_BE445431Ta19P012C05P025B091F1_039.ab1    44 
   99  C UCD015R_E05_BE445431Ta19P012C05P025B091R1_039.ab1   546 
  155    UCD015F_E05_BE445431Ta19P012C05P025B091F1_039.ab1   104 
  183  C UCD015R_E05_BE445431Ta19P012C05P025B091R1_039.ab1   462 
  211    UCD015F_E05_BE445431Ta19P012C05P025B091F1_039.ab1   160 
  287  C UCD015R_E05_BE445431Ta19P012C05P025B091R1_039.ab1   358 
  303    UCD015F_E05_BE445431Ta19P012C05P025B091F1_039.ab1   252 
  335  C UCD015R_E05_BE445431Ta19P012C05P025B091R1_039.ab1   310 
  387    UCD015F_E05_BE445431Ta19P012C05P025B091F1_039.ab1   336 
  435  C UCD015R_E05_BE445431Ta19P012C05P025B091R1_039.ab1   210 
  491    UCD015F_E05_BE445431Ta19P012C05P025B091F1_039.ab1   440 
  503  C UCD015R_E05_BE445431Ta19P012C05P025B091R1_039.ab1   142 
  507    UCD015F_E05_BE445431Ta19P012C05P025B091F1_039.ab1   456 
  519  C UCD015R_E05_BE445431Ta19P012C05P025B091R1_039.ab1   126 
  539    UCD015F_E05_BE445431Ta19P012C05P025B091F1_039.ab1   488 
  563  C UCD015R_E05_BE445431Ta19P012C05P025B091R1_039.ab1    82 
  571    UCD015F_E05_BE445431Ta19P012C05P025B091F1_039.ab1   520 
  575  C UCD015R_E05_BE445431Ta19P012C05P025B091R1_039.ab1    70 
  587    UCD015F_E05_BE445431Ta19P012C05P025B091F1_039.ab1   536 
  591  C UCD015R_E05_BE445431Ta19P012C05P025B091R1_039.ab1    54 
  611    UCD015F_E05_BE445431Ta19P012C05P025B091F1_039.ab1   560 
  629  C UCD015R_E05_BE445431Ta19P012C05P025B091R1_039.ab1    17 
  637    UCD015F_E05_BE445431Ta19P012C05P025B091F1_039.ab1   586 
Contig length: old 687, new 688

Contig length: old 688, new 688
New start: 0